/EXTERNAL ENCODE/methylation/K005745_K005725_2_lane_gembs
BACK
SAMPLE K005745_K005725_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27000736 |
22778447 |
84.36 % |
| NonRefCpG |
265536 |
194155 |
73.12 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
8565339 |
16.11 % |
6119963 |
12.92 % |
74940 |
14.98 % |
47457 |
11.69 % |
| Intermediate (0.3-0.7) |
10799206 |
20.31 % |
9010288 |
19.03 % |
115585 |
23.11 % |
83249 |
20.50 % |
| Methylated (0.7-1) |
33798144 |
63.57 % |
32223667 |
68.05 % |
309612 |
61.91 % |
275296 |
67.81 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.820 |
|
0.850 |
|
0.800 |
|
0.840 |
|