/EXTERNAL ENCODE/K005711_K005708_2_lane_gembs

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SAMPLE K005711_K005708_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2134477964 100.00 % 1067238982 100.00 % 1067238982 100.00 %
General Reads 2017463678 94.52 % 1000081613 93.71 % 1017382065 95.33 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11233919 0.53 % 5632752 0.53 % 5601167 0.52 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 105780367 4.96 % 61524617 5.76 % 44255750 4.15 %
Bisulfite_reads C2T 1025673866 48.05 % 508612475 47.66 % 517061391 48.45 %
Bisulfite_reads G2A 1003023731 46.99 % 497101890 46.58 % 505921841 47.40 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 684201271
Average Unique 64.11 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 108425861661 37.62 % 43934853938 30.49 % 64491007723 44.75 %
Base Counts Overall C 34325916636 11.91 % 6925331326 4.81 % 27400585310 19.01 %
Base Counts Overall G 38128711708 13.23 % 28117507244 19.51 % 10011204464 6.95 %
Base Counts Overall T 105155436116 36.49 % 64054225092 44.45 % 41101211024 28.52 %
Base Counts Overall N 2170559943 0.75 % 1071325432 0.74 % 1099234511 0.76 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9515145364983685
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 781214153



Mapping Quality

Mapping Quality Histogram
K005711_K005708_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005711_K005708_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF311PSV_125bp_chastity
ENCFF800KIP_150bp_chastity