/EXTERNAL ENCODE/methylation/K005711_K005708_2_lane_gembs
BACK
SAMPLE K005711_K005708_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27085813 |
23809903 |
87.91 % |
| NonRefCpG |
269576 |
207546 |
76.99 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4300658 |
8.05 % |
2578878 |
5.28 % |
28709 |
5.62 % |
7839 |
1.84 % |
| Intermediate (0.3-0.7) |
6303671 |
11.81 % |
5083329 |
10.41 % |
67603 |
13.24 % |
41354 |
9.69 % |
| Methylated (0.7-1) |
42787761 |
80.14 % |
41165545 |
84.31 % |
414322 |
81.14 % |
377589 |
88.47 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.880 |
|
0.870 |
|
0.880 |
|