/EXTERNAL ENCODE/K005746_K005730_2_lane_gembs

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SAMPLE K005746_K005730_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 3230412264 100.00 % 1615206132 100.00 % 1615206132 100.00 %
General Reads 3115867499 96.45 % 1564566617 96.86 % 1551300882 96.04 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 52771138 1.63 % 26576908 1.65 % 26194230 1.62 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 61773627 1.91 % 24062607 1.49 % 37711020 2.33 %
Bisulfite_reads C2T 1606085156 49.72 % 806400520 49.93 % 799684636 49.51 %
Bisulfite_reads G2A 1562553481 48.37 % 784743005 48.58 % 777810476 48.16 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1242980725
Average Unique 76.95 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 186807559743 38.30 % 73085678952 29.97 % 113721880791 46.63 %
Base Counts Overall C 53128751177 10.89 % 5475630242 2.25 % 47653120935 19.54 %
Base Counts Overall G 56811822308 11.65 % 48252909677 19.78 % 8558912631 3.51 %
Base Counts Overall T 187799509219 38.50 % 115452641489 47.34 % 72346867730 29.66 %
Base Counts Overall N 3244609417 0.67 % 1629265572 0.67 % 1615343845 0.66 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9549970070340428
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1382864498



Mapping Quality

Mapping Quality Histogram
K005746_K005730_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005746_K005730_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF710XQC_150bp_chastity
ENCFF055UXZ_150bp_chastity