/EXTERNAL ENCODE/mapping_coverage/K005746_K005730_2_lane_gembs
BACK
SAMPLE K005746_K005730_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2849126775 |
100% |
386300375688 |
100% |
| Mapped |
2806408772 |
98.50 % |
379892675238 |
98.34 % |
| Passed |
1910835226 |
67.07 % |
245556643338 |
63.57 % |
| NotPassed |
895573546 |
31.43 % |
134336031900 |
34.78 % |
| |
|
|
|
|
| LowMAPQ |
573209184 |
20.12 % |
85981377600 |
22.26 % |
| MateUnmapped |
42718003 |
1.50 % |
6407700450 |
1.66 % |
| Duplicate |
277245804 |
9.73 % |
41586870600 |
10.77 % |
| BadOrientation |
284 |
0.00 % |
42600 |
0.00 % |
| LargeInsertSize |
28750 |
0.00 % |
4312500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
45089524 |
1.58 % |
6763428600 |
1.75 % |
| Unmapped |
42718003 |
1.50 % |
6407700450 |
1.66 % |
Base Level Counts
| Bases |
# |
% |
| Total |
286460521950 |
100% |
| Passed |
222180708032 |
77.56 % |
| Trimmed |
7867817265 |
2.75 % |
| Clipped |
1774841769 |
0.62 % |
| Overlapping |
39129036843 |
13.66 % |
| LowQuality |
15508118041 |
5.41 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |