/EXTERNAL ENCODE/methylation/K005746_K005730_2_lane_gembs
BACK
SAMPLE K005746_K005730_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27338998 |
25475094 |
93.18 % |
| NonRefCpG |
259798 |
213501 |
82.18 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7634062 |
14.11 % |
6725724 |
13.03 % |
51126 |
10.30 % |
35838 |
8.26 % |
| Intermediate (0.3-0.7) |
10349463 |
19.13 % |
9671476 |
18.73 % |
110830 |
22.33 % |
90332 |
20.83 % |
| Methylated (0.7-1) |
36128435 |
66.77 % |
35239797 |
68.25 % |
334349 |
67.37 % |
307481 |
70.91 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.840 |
|
0.840 |
|
0.830 |
|
0.850 |
|