/EXTERNAL ENCODE/K005741_K005740_2_lane_gembs/ENCFF113KRQ_125bp_chastity
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1169941678 | 100.00 % | 584970839 | 100.00 % | 584970839 | 100.00 % |
| General Reads | 1134767051 | 96.99 % | 568551048 | 97.19 % | 566216003 | 96.79 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6167385 | 0.53 % | 3097614 | 0.53 % | 3069771 | 0.52 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 29007242 | 2.48 % | 13322177 | 2.28 % | 15685065 | 2.68 % |
| Bisulfite_reads C2T | 579936810 | 49.57 % | 290577882 | 49.67 % | 289358928 | 49.47 % |
| Bisulfite_reads G2A | 560997626 | 47.95 % | 281070780 | 48.05 % | 279926846 | 47.85 % |
| Concept | Value |
|---|---|
| Unique Fragments | 432646295 |
| Average Unique | 73.96 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 58444546853 | 39.06 % | 22545905171 | 30.13 % | 35898641682 | 47.98 % |
| Base Counts Overall C | 15798660354 | 10.56 % | 1214030935 | 1.62 % | 14584629419 | 19.49 % |
| Base Counts Overall G | 16320607404 | 10.91 % | 14552671827 | 19.45 % | 1767935577 | 2.36 % |
| Base Counts Overall T | 57839669940 | 38.65 % | 35920151517 | 48.01 % | 21919518423 | 29.30 % |
| Base Counts Overall N | 1239388013 | 0.83 % | 588676832 | 0.79 % | 650711181 | 0.87 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9790085903415325 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 487936508 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 125 | 542081971 |
| 151 | 42888868 |
| 125 | 542081971 |
| 151 | 42888868 |
| Insert Size Histogram |
|---|
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