/EXTERNAL ENCODE/K005741_K005740_2_lane_gembs

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SAMPLE K005741_K005740_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2246904462 100.00 % 1123452231 100.00 % 1123452231 100.00 %
General Reads 2192062689 97.56 % 1099758755 97.89 % 1092303934 97.23 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10551284 0.47 % 5300891 0.47 % 5250393 0.47 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 44290489 1.97 % 18392585 1.64 % 25897904 2.31 %
Bisulfite_reads C2T 1119608182 49.83 % 561707160 50.00 % 557901022 49.66 %
Bisulfite_reads G2A 1083005791 48.20 % 543352486 48.36 % 539653305 48.04 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 878987168
Average Unique 78.24 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 113086959371 39.24 % 43796615392 30.40 % 69290343979 48.09 %
Base Counts Overall C 29800222037 10.34 % 1781646963 1.24 % 28018575074 19.45 %
Base Counts Overall G 30179019811 10.47 % 27630057738 19.18 % 2548962073 1.77 %
Base Counts Overall T 112716322605 39.11 % 69747368697 48.41 % 42968953908 29.82 %
Base Counts Overall N 2390645264 0.83 % 1130895754 0.78 % 1259749510 0.87 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9835816132712645
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 987351278



Mapping Quality

Mapping Quality Histogram
K005741_K005740_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005741_K005740_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF585BXF_125bp_chastity
ENCFF113KRQ_125bp_chastity