/EXTERNAL ENCODE/mapping_coverage/K005741_K005740_2_lane_gembs
BACK
SAMPLE K005741_K005740_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2113074577 |
100% |
231447556882 |
100% |
| Mapped |
2086440544 |
98.74 % |
228051515309 |
98.53 % |
| Passed |
1599829029 |
75.71 % |
166024840612 |
71.73 % |
| NotPassed |
486611515 |
23.03 % |
62026674697 |
26.80 % |
| |
|
|
|
|
| LowMAPQ |
351712858 |
16.64 % |
44917886414 |
19.41 % |
| MateUnmapped |
26634033 |
1.26 % |
3396041573 |
1.47 % |
| Duplicate |
80935313 |
3.83 % |
10247641475 |
4.43 % |
| BadOrientation |
324 |
0.00 % |
41592 |
0.00 % |
| LargeInsertSize |
18362 |
0.00 % |
2374134 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
53944658 |
2.55 % |
6858731082 |
2.96 % |
| Unmapped |
26634033 |
1.26 % |
3396041573 |
1.47 % |
Base Level Counts
| Bases |
# |
% |
| Total |
203497654587 |
100% |
| Passed |
155928369183 |
76.62 % |
| Trimmed |
6828403164 |
3.36 % |
| Clipped |
830270649 |
0.41 % |
| Overlapping |
36642543326 |
18.01 % |
| LowQuality |
3268068265 |
1.61 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |