/EXTERNAL ENCODE/methylation/K005741_K005740_2_lane_gembs
BACK
SAMPLE K005741_K005740_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27014135 |
23842179 |
88.26 % |
| NonRefCpG |
257358 |
197148 |
76.60 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
18475269 |
34.62 % |
16535712 |
33.60 % |
179663 |
36.55 % |
147353 |
35.88 % |
| Intermediate (0.3-0.7) |
13373672 |
25.06 % |
12059679 |
24.51 % |
133763 |
27.22 % |
106430 |
25.91 % |
| Methylated (0.7-1) |
21510835 |
40.31 % |
20612924 |
41.89 % |
178078 |
36.23 % |
156939 |
38.21 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.550 |
|
0.570 |
|
0.500 |
|
0.520 |
|