/EXTERNAL DEEP/K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs/01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422354.01
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 164901692 | 100.00 % | 82450846 | 100.00 % | 82450846 | 100.00 % |
| General Reads | 159079256 | 96.47 % | 79778189 | 96.76 % | 79301067 | 96.18 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 2 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5822430 | 3.53 % | 2672655 | 3.24 % | 3149775 | 3.82 % |
| Bisulfite_reads C2T | 81411410 | 49.37 % | 40825324 | 49.51 % | 40586086 | 49.22 % |
| Bisulfite_reads G2A | 77667852 | 47.10 % | 38952867 | 47.24 % | 38714985 | 46.96 % |
| Concept | Value |
|---|---|
| Unique Fragments | 63872573 |
| Average Unique | 77.47 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 6111160223 | 36.69 % | 2349126286 | 28.21 % | 3762033937 | 45.18 % |
| Base Counts Overall C | 2147397579 | 12.89 % | 112859760 | 1.36 % | 2034537819 | 24.43 % |
| Base Counts Overall G | 2210822291 | 13.27 % | 2107616437 | 25.31 % | 103205854 | 1.24 % |
| Base Counts Overall T | 6017857113 | 36.13 % | 3675149312 | 44.13 % | 2342707801 | 28.13 % |
| Base Counts Overall N | 167833686 | 1.01 % | 82783651 | 0.99 % | 85050035 | 1.02 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 76521484 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 100 | 82450846 |
| 100 | 82450846 |
| Insert Size Histogram |
|---|
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