/EXTERNAL DEEP/K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs/01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422356.01

BACK

SAMPLE K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs LANE 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422356.01

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 76282382 100.00 % 38141191 100.00 % 38141191 100.00 %
General Reads 73773775 96.71 % 37007714 97.03 % 36766061 96.39 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 2508607 3.29 % 1133477 2.97 % 1375130 3.61 %
Bisulfite_reads C2T 37776894 49.52 % 18947734 49.68 % 18829160 49.37 %
Bisulfite_reads G2A 35996881 47.19 % 18059980 47.35 % 17936901 47.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 29619643
Average Unique 77.66 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2826969438 36.69 % 1086847681 28.21 % 1740121757 45.17 %
Base Counts Overall C 989661913 12.85 % 49710743 1.29 % 939951170 24.40 %
Base Counts Overall G 1021589881 13.26 % 974812627 25.30 % 46777254 1.21 %
Base Counts Overall T 2786160097 36.16 % 1701028565 44.16 % 1085131532 28.17 %
Base Counts Overall N 80139253 1.04 % 39860675 1.03 % 40278578 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 35487639



Mapping Quality

Mapping Quality Histogram
01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422356.01.mapq.png



Read Length

Read Length Reads
100 38141191
100 38141191



Insert Size Plot

Insert Size Histogram
01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422356.01.isize.png