/EXTERNAL DEEP/K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs/01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422357.01
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 138562804 | 100.00 % | 69281402 | 100.00 % | 69281402 | 100.00 % |
| General Reads | 134096602 | 96.78 % | 67263136 | 97.09 % | 66833466 | 96.47 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 3 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4466196 | 3.22 % | 2018263 | 2.91 % | 2447933 | 3.53 % |
| Bisulfite_reads C2T | 68623230 | 49.53 % | 34419203 | 49.68 % | 34204027 | 49.37 % |
| Bisulfite_reads G2A | 65473378 | 47.25 % | 32843936 | 47.41 % | 32629442 | 47.10 % |
| Concept | Value |
|---|---|
| Unique Fragments | 53796510 |
| Average Unique | 77.65 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 5138140826 | 36.71 % | 1970435988 | 28.16 % | 3167704838 | 45.27 % |
| Base Counts Overall C | 1799073940 | 12.86 % | 89754118 | 1.28 % | 1709319822 | 24.43 % |
| Base Counts Overall G | 1855132602 | 13.26 % | 1770063624 | 25.30 % | 85068978 | 1.22 % |
| Base Counts Overall T | 5062798274 | 36.18 % | 3097525561 | 44.27 % | 1965272713 | 28.09 % |
| Base Counts Overall N | 139697562 | 1.00 % | 69642311 | 1.00 % | 70055251 | 1.00 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 64489590 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 100 | 69281402 |
| 100 | 69281402 |
| Insert Size Histogram |
|---|
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