/EXTERNAL DEEP/K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs/01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422374.01

BACK

SAMPLE K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs LANE 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422374.01

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 349162928 100.00 % 174581464 100.00 % 174581464 100.00 %
General Reads 344311582 98.61 % 172398543 98.75 % 171913039 98.47 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 390388 0.11 % 195511 0.11 % 194877 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4460958 1.28 % 1987410 1.14 % 2473548 1.42 %
Bisulfite_reads C2T 177531823 50.84 % 88874049 50.91 % 88657774 50.78 %
Bisulfite_reads G2A 167170147 47.88 % 83720005 47.95 % 83450142 47.80 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 138709083
Average Unique 79.45 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12657712273 39.06 % 5209581772 33.69 % 7448130501 43.98 %
Base Counts Overall C 3707941043 11.44 % 119984688 0.78 % 3587956355 21.19 %
Base Counts Overall G 3592841933 11.09 % 3473777979 22.46 % 119063954 0.70 %
Base Counts Overall T 12092264418 37.32 % 6486685454 41.94 % 5605578964 33.10 %
Base Counts Overall N 350953931 1.08 % 175538067 1.14 % 175415864 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9938135034185399
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 167144393



Mapping Quality

Mapping Quality Histogram
01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422374.01.mapq.png



Read Length

Read Length Reads
59 471663
79 456345
91 1252821
75 462247
74 462425
82 219445
34 461308
84 443282
50 462042
94 4502995
52 470701
92 2166388
32 468406
41 463646
88 3533519
69 578626
70 587915
67 489382
38 469007
23 477633
45 490154
64 464453
43 460831
54 461759
20 477429
77 465813
72 472385
37 465150
76 473035
71 530872
65 461538
55 462204
56 460536
85 679693
80 384088
24 477069
51 463092
63 455452
46 470505
90 4105896
25 478738
97 60758227
30 465001
96 42547363
53 448826
93 3284491
89 7801174
95 11007412
58 455715
48 459606
21 484580
29 470051
81 244141
78 470307
83 338942
42 461979
44 478672
31 467905
26 478062
47 494169
27 483012
36 466593
40 494770
73 462859
39 472895
62 448611
87 1834208
28 471093
33 459053
61 478643
57 481040
35 464815
66 479775
60 462601
49 453689
22 482667
86 998286
68 509743
59 60515
79 87333
91 436893
75 72455
74 69178
82 171416
34 58095
84 131699
50 49899
94 4905591
52 50042
92 862899
32 56158
41 63741
88 354515
69 61633
70 62446
67 64686
38 57024
23 43361
45 62673
64 137551
43 64837
54 54961
20 52161
77 79515
72 64545
37 57656
76 76880
71 64362
65 95721
55 51201
56 53523
85 136578
80 108720
24 45170
51 50288
63 204462
46 64089
90 569942
25 51572
97 33515126
30 52921
96 12460680
53 49015
93 1582465
89 592942
95 12628276
58 57863
48 55548
21 52310
29 52846
81 138560
78 81024
83 139055
42 58271
44 65009
31 54417
26 50936
47 70403
27 56484
36 57314
40 70973
73 66073
39 64364
62 199221
87 220099
28 58884
33 55237
61 109980
57 56022
35 74097
66 71341
60 59893
49 53273
98 101409597
22 46131
86 165586
68 63242



Insert Size Plot

Insert Size Histogram
01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422374.01.isize.png