/EXTERNAL DEEP/K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs/01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422375.01

BACK

SAMPLE K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs LANE 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422375.01

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	443469602	100.00 %	221734801	100.00 %	221734801	100.00 %
General Reads	413947037	93.34 %	208176268	93.89 %	205770769	92.80 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	55	0.00 %	28	0.00 %	27	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	29522510	6.66 %	13558505	6.11 %	15964005	7.20 %
Bisulfite_reads C2T	211538871	47.70 %	106350043	47.96 %	105188828	47.44 %
Bisulfite_reads G2A	202408221	45.64 %	101826253	45.92 %	100581968	45.36 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	108420377
Average Unique	48.90 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	16104325942	35.95 %	6507837898	29.06 %	9596488044	42.85 %
Base Counts Overall C	6205226284	13.85 %	1167988389	5.22 %	5037237895	22.49 %
Base Counts Overall G	6826728674	15.24 %	5336969227	23.83 %	1489759447	6.65 %
Base Counts Overall T	15206177203	33.95 %	9160216485	40.90 %	6045960718	27.00 %
Base Counts Overall N	447971699	1.00 %	222202902	0.99 %	225768797	1.01 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	129666339

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	221734801
100	221734801

Insert Size Plot

Insert Size Histogram