/EXTERNAL DEEP/K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs/01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422376.01

BACK

SAMPLE K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs LANE 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422376.01

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	432049512	100.00 %	216024756	100.00 %	216024756	100.00 %
General Reads	403760557	93.45 %	202972837	93.96 %	200787720	92.95 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	14	0.00 %	6	0.00 %	8	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	28288941	6.55 %	13051913	6.04 %	15237028	7.05 %
Bisulfite_reads C2T	206236145	47.73 %	103643450	47.98 %	102592695	47.49 %
Bisulfite_reads G2A	197524426	45.72 %	99329393	45.98 %	98195033	45.46 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	105881899
Average Unique	49.01 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	15712712099	36.01 %	6338921527	29.05 %	9373790572	42.96 %
Base Counts Overall C	6020774528	13.80 %	1129827798	5.18 %	4890946730	22.42 %
Base Counts Overall G	6641113216	15.22 %	5185532896	23.77 %	1455580320	6.67 %
Base Counts Overall T	14819590981	33.96 %	8946260712	41.00 %	5873330269	26.92 %
Base Counts Overall N	442809888	1.01 %	217957423	1.00 %	224852465	1.03 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	126655587

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	216024756
100	216024756

Insert Size Plot

Insert Size Histogram