/EXTERNAL DEEP/K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs/01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422377.01

BACK

SAMPLE K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs LANE 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422377.01

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 354121974 100.00 % 177060987 100.00 % 177060987 100.00 %
General Reads 349185022 98.61 % 174838110 98.74 % 174346912 98.47 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 399895 0.11 % 200284 0.11 % 199611 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4537057 1.28 % 2022593 1.14 % 2514464 1.42 %
Bisulfite_reads C2T 180055598 50.85 % 90135944 50.91 % 89919654 50.78 %
Bisulfite_reads G2A 169529319 47.87 % 84902450 47.95 % 84626869 47.80 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 140771507
Average Unique 79.50 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12833569833 39.01 % 5281618681 33.61 % 7551951152 43.95 %
Base Counts Overall C 3772113976 11.47 % 124590321 0.79 % 3647523655 21.23 %
Base Counts Overall G 3660248660 11.13 % 3536999315 22.51 % 123249345 0.72 %
Base Counts Overall T 12278512164 37.32 % 6595324667 41.96 % 5683187497 33.07 %
Base Counts Overall N 355885513 1.08 % 177964516 1.13 % 177920997 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9940178370877888
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 169580376



Mapping Quality

Mapping Quality Histogram
01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422377.01.mapq.png



Read Length

Read Length Reads
59 459067
79 445886
91 1244255
75 458750
74 457996
82 204028
34 463560
84 426140
50 457381
94 4502823
52 456648
92 2164078
32 469258
41 459337
88 3578098
69 639132
70 615575
67 480537
38 465770
23 478541
45 467228
64 454036
43 458759
54 453797
20 477866
77 461143
72 465147
37 462815
76 463504
71 526760
65 457576
55 454298
56 454247
85 659195
80 372622
24 478164
51 453160
63 449279
46 464204
90 4152558
25 479255
97 62348221
30 467679
96 43386931
53 446841
93 3306638
89 7924696
95 11172253
58 450531
48 455204
21 486627
29 473045
81 230009
78 461874
83 319959
42 459038
44 461839
31 467187
26 480050
47 469485
27 485485
36 466070
40 474988
73 459317
39 464076
62 444070
87 1817409
28 472692
33 459638
61 473959
57 466998
35 465921
66 467904
60 458690
49 451326
22 483171
86 976661
68 512032
59 58155
79 83832
91 430677
75 70931
74 66457
82 175293
34 56510
84 132292
50 48998
94 4948276
52 48528
92 859608
32 54737
41 62307
88 353154
69 60227
70 60012
67 64136
38 56730
23 42562
45 58845
64 165203
43 59791
54 53132
20 50536
77 76376
72 62750
37 56886
76 74802
71 61234
65 98290
55 49038
56 51708
85 137142
80 101031
24 44332
51 48181
63 247511
46 62444
90 573366
25 49477
97 34019887
30 52037
96 12601028
53 48273
93 1586359
89 596191
95 12828251
58 55297
48 56536
21 49035
29 51708
81 143822
78 79355
83 149860
42 55188
44 60261
31 52567
26 50406
47 65915
27 53092
36 56328
40 66874
73 63997
39 62496
62 176966
87 217971
28 55796
33 54157
61 100659
57 54733
35 69289
66 72723
60 57917
49 54155
98 103058635
22 43996
86 162614
68 61116



Insert Size Plot

Insert Size Histogram
01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422377.01.isize.png