Sample K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs
===========================================================================

Mapping Stats (Reads)
---------------------

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |1958550894                                  |100.00 %                                    |979275447                                   |100.00 %                                    |979275447                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |1878153831                                  |95.90 %                                     |942434797                                   |96.24 %                                     |935719034                                   |95.55 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |790364                                      |0.04 %                                      |395834                                      |0.04 %                                      |394530                                      |0.04 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |79606699                                    |4.06 %                                      |36444816                                    |3.72 %                                      |43161883                                    |4.41 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |963173971                                   |49.18 %                                     |483195747                                   |49.34 %                                     |479978224                                   |49.01 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |915770224                                   |46.76 %                                     |459634884                                   |46.94 %                                     |456135340                                   |46.58 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
----------------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |641071592                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |65.46 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
---------------------

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |71384590634                                 |37.16 %                                     |28744369833                                 |30.39 %                                     |42640220801                                 |43.73 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |24642189263                                 |12.83 %                                     |2794715817                                  |2.96 %                                      |21847473446                                 |22.41 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |25808477257                                 |13.44 %                                     |22385772105                                 |23.67 %                                     |3422705152                                  |3.51 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |68263360250                                 |35.54 %                                     |39662190756                                 |41.94 %                                     |28601169494                                 |29.33 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |1985291532                                  |1.03 %                                      |985949545                                   |1.04 %                                      |999341987                                   |1.02 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
-------------------------

.. image:: K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs_mapq.png

Bisulfite Conversion Rate
-------------------------

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9938683492943068                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
---------------------

.. image:: K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs_isize.png

Correct Pairs
-------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |769545408                                  |
+--------------------------------------------+-------------------------------------------+

Sample K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs Lane 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422374.01
-------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |349162928                                   |100.00 %                                    |174581464                                   |100.00 %                                    |174581464                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |344311582                                   |98.61 %                                     |172398543                                   |98.75 %                                     |171913039                                   |98.47 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |390388                                      |0.11 %                                      |195511                                      |0.11 %                                      |194877                                      |0.11 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4460958                                     |1.28 %                                      |1987410                                     |1.14 %                                      |2473548                                     |1.42 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |177531823                                   |50.84 %                                     |88874049                                    |50.91 %                                     |88657774                                    |50.78 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |167170147                                   |47.88 %                                     |83720005                                    |47.95 %                                     |83450142                                    |47.80 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |138709083                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |79.45 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |12657712273                                 |39.06 %                                     |5209581772                                  |33.69 %                                     |7448130501                                  |43.98 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |3707941043                                  |11.44 %                                     |119984688                                   |0.78 %                                      |3587956355                                  |21.19 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |3592841933                                  |11.09 %                                     |3473777979                                  |22.46 %                                     |119063954                                   |0.70 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |12092264418                                 |37.32 %                                     |6486685454                                  |41.94 %                                     |5605578964                                  |33.10 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |350953931                                   |1.08 %                                      |175538067                                   |1.14 %                                      |175415864                                   |1.04 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9938135034185399                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |167144393                                  |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422374.01_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|59                                          |471663                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |456345                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |1252821                                    |
+--------------------------------------------+-------------------------------------------+
|75                                          |462247                                     |
+--------------------------------------------+-------------------------------------------+
|74                                          |462425                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |219445                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |461308                                     |
+--------------------------------------------+-------------------------------------------+
|84                                          |443282                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |462042                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |4502995                                    |
+--------------------------------------------+-------------------------------------------+
|52                                          |470701                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |2166388                                    |
+--------------------------------------------+-------------------------------------------+
|32                                          |468406                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |463646                                     |
+--------------------------------------------+-------------------------------------------+
|88                                          |3533519                                    |
+--------------------------------------------+-------------------------------------------+
|69                                          |578626                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |587915                                     |
+--------------------------------------------+-------------------------------------------+
|67                                          |489382                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |469007                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |477633                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |490154                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |464453                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |460831                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |461759                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |477429                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |465813                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |472385                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |465150                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |473035                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |530872                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |461538                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |462204                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |460536                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |679693                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |384088                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |477069                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |463092                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |455452                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |470505                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |4105896                                    |
+--------------------------------------------+-------------------------------------------+
|25                                          |478738                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |60758227                                   |
+--------------------------------------------+-------------------------------------------+
|30                                          |465001                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |42547363                                   |
+--------------------------------------------+-------------------------------------------+
|53                                          |448826                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |3284491                                    |
+--------------------------------------------+-------------------------------------------+
|89                                          |7801174                                    |
+--------------------------------------------+-------------------------------------------+
|95                                          |11007412                                   |
+--------------------------------------------+-------------------------------------------+
|58                                          |455715                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |459606                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |484580                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |470051                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |244141                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |470307                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |338942                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |461979                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |478672                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |467905                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |478062                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |494169                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |483012                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |466593                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |494770                                     |
+--------------------------------------------+-------------------------------------------+
|73                                          |462859                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |472895                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |448611                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |1834208                                    |
+--------------------------------------------+-------------------------------------------+
|28                                          |471093                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |459053                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |478643                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |481040                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |464815                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |479775                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |462601                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |453689                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |482667                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |998286                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |509743                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |60515                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |87333                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |436893                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |72455                                      |
+--------------------------------------------+-------------------------------------------+
|74                                          |69178                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |171416                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |58095                                      |
+--------------------------------------------+-------------------------------------------+
|84                                          |131699                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |49899                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |4905591                                    |
+--------------------------------------------+-------------------------------------------+
|52                                          |50042                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |862899                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |56158                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |63741                                      |
+--------------------------------------------+-------------------------------------------+
|88                                          |354515                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |61633                                      |
+--------------------------------------------+-------------------------------------------+
|70                                          |62446                                      |
+--------------------------------------------+-------------------------------------------+
|67                                          |64686                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |57024                                      |
+--------------------------------------------+-------------------------------------------+
|23                                          |43361                                      |
+--------------------------------------------+-------------------------------------------+
|45                                          |62673                                      |
+--------------------------------------------+-------------------------------------------+
|64                                          |137551                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |64837                                      |
+--------------------------------------------+-------------------------------------------+
|54                                          |54961                                      |
+--------------------------------------------+-------------------------------------------+
|20                                          |52161                                      |
+--------------------------------------------+-------------------------------------------+
|77                                          |79515                                      |
+--------------------------------------------+-------------------------------------------+
|72                                          |64545                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |57656                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |76880                                      |
+--------------------------------------------+-------------------------------------------+
|71                                          |64362                                      |
+--------------------------------------------+-------------------------------------------+
|65                                          |95721                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |51201                                      |
+--------------------------------------------+-------------------------------------------+
|56                                          |53523                                      |
+--------------------------------------------+-------------------------------------------+
|85                                          |136578                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |108720                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |45170                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |50288                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |204462                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |64089                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |569942                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |51572                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |33515126                                   |
+--------------------------------------------+-------------------------------------------+
|30                                          |52921                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |12460680                                   |
+--------------------------------------------+-------------------------------------------+
|53                                          |49015                                      |
+--------------------------------------------+-------------------------------------------+
|93                                          |1582465                                    |
+--------------------------------------------+-------------------------------------------+
|89                                          |592942                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |12628276                                   |
+--------------------------------------------+-------------------------------------------+
|58                                          |57863                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |55548                                      |
+--------------------------------------------+-------------------------------------------+
|21                                          |52310                                      |
+--------------------------------------------+-------------------------------------------+
|29                                          |52846                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |138560                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |81024                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |139055                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |58271                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |65009                                      |
+--------------------------------------------+-------------------------------------------+
|31                                          |54417                                      |
+--------------------------------------------+-------------------------------------------+
|26                                          |50936                                      |
+--------------------------------------------+-------------------------------------------+
|47                                          |70403                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |56484                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |57314                                      |
+--------------------------------------------+-------------------------------------------+
|40                                          |70973                                      |
+--------------------------------------------+-------------------------------------------+
|73                                          |66073                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |64364                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |199221                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |220099                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |58884                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |55237                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |109980                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |56022                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |74097                                      |
+--------------------------------------------+-------------------------------------------+
|66                                          |71341                                      |
+--------------------------------------------+-------------------------------------------+
|60                                          |59893                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |53273                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |101409597                                  |
+--------------------------------------------+-------------------------------------------+
|22                                          |46131                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |165586                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |63242                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422374.01_isize.png

Sample K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs Lane 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422357.01
-------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |138562804                                   |100.00 %                                    |69281402                                    |100.00 %                                    |69281402                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |134096602                                   |96.78 %                                     |67263136                                    |97.09 %                                     |66833466                                    |96.47 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |6                                           |0.00 %                                      |3                                           |0.00 %                                      |3                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4466196                                     |3.22 %                                      |2018263                                     |2.91 %                                      |2447933                                     |3.53 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |68623230                                    |49.53 %                                     |34419203                                    |49.68 %                                     |34204027                                    |49.37 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |65473378                                    |47.25 %                                     |32843936                                    |47.41 %                                     |32629442                                    |47.10 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |53796510                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |77.65 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |5138140826                                  |36.71 %                                     |1970435988                                  |28.16 %                                     |3167704838                                  |45.27 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1799073940                                  |12.86 %                                     |89754118                                    |1.28 %                                      |1709319822                                  |24.43 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1855132602                                  |13.26 %                                     |1770063624                                  |25.30 %                                     |85068978                                    |1.22 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |5062798274                                  |36.18 %                                     |3097525561                                  |44.27 %                                     |1965272713                                  |28.09 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |139697562                                   |1.00 %                                      |69642311                                    |1.00 %                                      |70055251                                    |1.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |64489590                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422357.01_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|100                                         |69281402                                   |
+--------------------------------------------+-------------------------------------------+
|100                                         |69281402                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422357.01_isize.png

Sample K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs Lane 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422377.01
-------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |354121974                                   |100.00 %                                    |177060987                                   |100.00 %                                    |177060987                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |349185022                                   |98.61 %                                     |174838110                                   |98.74 %                                     |174346912                                   |98.47 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |399895                                      |0.11 %                                      |200284                                      |0.11 %                                      |199611                                      |0.11 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4537057                                     |1.28 %                                      |2022593                                     |1.14 %                                      |2514464                                     |1.42 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |180055598                                   |50.85 %                                     |90135944                                    |50.91 %                                     |89919654                                    |50.78 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |169529319                                   |47.87 %                                     |84902450                                    |47.95 %                                     |84626869                                    |47.80 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |140771507                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |79.50 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |12833569833                                 |39.01 %                                     |5281618681                                  |33.61 %                                     |7551951152                                  |43.95 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |3772113976                                  |11.47 %                                     |124590321                                   |0.79 %                                      |3647523655                                  |21.23 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |3660248660                                  |11.13 %                                     |3536999315                                  |22.51 %                                     |123249345                                   |0.72 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |12278512164                                 |37.32 %                                     |6595324667                                  |41.96 %                                     |5683187497                                  |33.07 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |355885513                                   |1.08 %                                      |177964516                                   |1.13 %                                      |177920997                                   |1.04 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9940178370877888                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |169580376                                  |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422377.01_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|59                                          |459067                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |445886                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |1244255                                    |
+--------------------------------------------+-------------------------------------------+
|75                                          |458750                                     |
+--------------------------------------------+-------------------------------------------+
|74                                          |457996                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |204028                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |463560                                     |
+--------------------------------------------+-------------------------------------------+
|84                                          |426140                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |457381                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |4502823                                    |
+--------------------------------------------+-------------------------------------------+
|52                                          |456648                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |2164078                                    |
+--------------------------------------------+-------------------------------------------+
|32                                          |469258                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |459337                                     |
+--------------------------------------------+-------------------------------------------+
|88                                          |3578098                                    |
+--------------------------------------------+-------------------------------------------+
|69                                          |639132                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |615575                                     |
+--------------------------------------------+-------------------------------------------+
|67                                          |480537                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |465770                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |478541                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |467228                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |454036                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |458759                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |453797                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |477866                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |461143                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |465147                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |462815                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |463504                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |526760                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |457576                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |454298                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |454247                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |659195                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |372622                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |478164                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |453160                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |449279                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |464204                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |4152558                                    |
+--------------------------------------------+-------------------------------------------+
|25                                          |479255                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |62348221                                   |
+--------------------------------------------+-------------------------------------------+
|30                                          |467679                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |43386931                                   |
+--------------------------------------------+-------------------------------------------+
|53                                          |446841                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |3306638                                    |
+--------------------------------------------+-------------------------------------------+
|89                                          |7924696                                    |
+--------------------------------------------+-------------------------------------------+
|95                                          |11172253                                   |
+--------------------------------------------+-------------------------------------------+
|58                                          |450531                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |455204                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |486627                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |473045                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |230009                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |461874                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |319959                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |459038                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |461839                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |467187                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |480050                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |469485                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |485485                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |466070                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |474988                                     |
+--------------------------------------------+-------------------------------------------+
|73                                          |459317                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |464076                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |444070                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |1817409                                    |
+--------------------------------------------+-------------------------------------------+
|28                                          |472692                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |459638                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |473959                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |466998                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |465921                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |467904                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |458690                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |451326                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |483171                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |976661                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |512032                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |58155                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |83832                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |430677                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |70931                                      |
+--------------------------------------------+-------------------------------------------+
|74                                          |66457                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |175293                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |56510                                      |
+--------------------------------------------+-------------------------------------------+
|84                                          |132292                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |48998                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |4948276                                    |
+--------------------------------------------+-------------------------------------------+
|52                                          |48528                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |859608                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |54737                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |62307                                      |
+--------------------------------------------+-------------------------------------------+
|88                                          |353154                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |60227                                      |
+--------------------------------------------+-------------------------------------------+
|70                                          |60012                                      |
+--------------------------------------------+-------------------------------------------+
|67                                          |64136                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |56730                                      |
+--------------------------------------------+-------------------------------------------+
|23                                          |42562                                      |
+--------------------------------------------+-------------------------------------------+
|45                                          |58845                                      |
+--------------------------------------------+-------------------------------------------+
|64                                          |165203                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |59791                                      |
+--------------------------------------------+-------------------------------------------+
|54                                          |53132                                      |
+--------------------------------------------+-------------------------------------------+
|20                                          |50536                                      |
+--------------------------------------------+-------------------------------------------+
|77                                          |76376                                      |
+--------------------------------------------+-------------------------------------------+
|72                                          |62750                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |56886                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |74802                                      |
+--------------------------------------------+-------------------------------------------+
|71                                          |61234                                      |
+--------------------------------------------+-------------------------------------------+
|65                                          |98290                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |49038                                      |
+--------------------------------------------+-------------------------------------------+
|56                                          |51708                                      |
+--------------------------------------------+-------------------------------------------+
|85                                          |137142                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |101031                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |44332                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |48181                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |247511                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |62444                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |573366                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |49477                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |34019887                                   |
+--------------------------------------------+-------------------------------------------+
|30                                          |52037                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |12601028                                   |
+--------------------------------------------+-------------------------------------------+
|53                                          |48273                                      |
+--------------------------------------------+-------------------------------------------+
|93                                          |1586359                                    |
+--------------------------------------------+-------------------------------------------+
|89                                          |596191                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |12828251                                   |
+--------------------------------------------+-------------------------------------------+
|58                                          |55297                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |56536                                      |
+--------------------------------------------+-------------------------------------------+
|21                                          |49035                                      |
+--------------------------------------------+-------------------------------------------+
|29                                          |51708                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |143822                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |79355                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |149860                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |55188                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |60261                                      |
+--------------------------------------------+-------------------------------------------+
|31                                          |52567                                      |
+--------------------------------------------+-------------------------------------------+
|26                                          |50406                                      |
+--------------------------------------------+-------------------------------------------+
|47                                          |65915                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |53092                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |56328                                      |
+--------------------------------------------+-------------------------------------------+
|40                                          |66874                                      |
+--------------------------------------------+-------------------------------------------+
|73                                          |63997                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |62496                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |176966                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |217971                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |55796                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |54157                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |100659                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |54733                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |69289                                      |
+--------------------------------------------+-------------------------------------------+
|66                                          |72723                                      |
+--------------------------------------------+-------------------------------------------+
|60                                          |57917                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |54155                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |103058635                                  |
+--------------------------------------------+-------------------------------------------+
|22                                          |43996                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |162614                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |61116                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422377.01_isize.png

Sample K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs Lane 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422376.01
-------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |432049512                                   |100.00 %                                    |216024756                                   |100.00 %                                    |216024756                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |403760557                                   |93.45 %                                     |202972837                                   |93.96 %                                     |200787720                                   |92.95 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |14                                          |0.00 %                                      |6                                           |0.00 %                                      |8                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |28288941                                    |6.55 %                                      |13051913                                    |6.04 %                                      |15237028                                    |7.05 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |206236145                                   |47.73 %                                     |103643450                                   |47.98 %                                     |102592695                                   |47.49 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |197524426                                   |45.72 %                                     |99329393                                    |45.98 %                                     |98195033                                    |45.46 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |105881899                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |49.01 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |15712712099                                 |36.01 %                                     |6338921527                                  |29.05 %                                     |9373790572                                  |42.96 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |6020774528                                  |13.80 %                                     |1129827798                                  |5.18 %                                      |4890946730                                  |22.42 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |6641113216                                  |15.22 %                                     |5185532896                                  |23.77 %                                     |1455580320                                  |6.67 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |14819590981                                 |33.96 %                                     |8946260712                                  |41.00 %                                     |5873330269                                  |26.92 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |442809888                                   |1.01 %                                      |217957423                                   |1.00 %                                      |224852465                                   |1.03 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |126655587                                  |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422376.01_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|100                                         |216024756                                  |
+--------------------------------------------+-------------------------------------------+
|100                                         |216024756                                  |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422376.01_isize.png

Sample K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs Lane 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422354.01
-------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |164901692                                   |100.00 %                                    |82450846                                    |100.00 %                                    |82450846                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |159079256                                   |96.47 %                                     |79778189                                    |96.76 %                                     |79301067                                    |96.18 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |6                                           |0.00 %                                      |2                                           |0.00 %                                      |4                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5822430                                     |3.53 %                                      |2672655                                     |3.24 %                                      |3149775                                     |3.82 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |81411410                                    |49.37 %                                     |40825324                                    |49.51 %                                     |40586086                                    |49.22 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |77667852                                    |47.10 %                                     |38952867                                    |47.24 %                                     |38714985                                    |46.96 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |63872573                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |77.47 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |6111160223                                  |36.69 %                                     |2349126286                                  |28.21 %                                     |3762033937                                  |45.18 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |2147397579                                  |12.89 %                                     |112859760                                   |1.36 %                                      |2034537819                                  |24.43 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |2210822291                                  |13.27 %                                     |2107616437                                  |25.31 %                                     |103205854                                   |1.24 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |6017857113                                  |36.13 %                                     |3675149312                                  |44.13 %                                     |2342707801                                  |28.13 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |167833686                                   |1.01 %                                      |82783651                                    |0.99 %                                      |85050035                                    |1.02 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |76521484                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422354.01_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|100                                         |82450846                                   |
+--------------------------------------------+-------------------------------------------+
|100                                         |82450846                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422354.01_isize.png

Sample K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs Lane 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422375.01
-------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |443469602                                   |100.00 %                                    |221734801                                   |100.00 %                                    |221734801                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |413947037                                   |93.34 %                                     |208176268                                   |93.89 %                                     |205770769                                   |92.80 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |55                                          |0.00 %                                      |28                                          |0.00 %                                      |27                                          |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |29522510                                    |6.66 %                                      |13558505                                    |6.11 %                                      |15964005                                    |7.20 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |211538871                                   |47.70 %                                     |106350043                                   |47.96 %                                     |105188828                                   |47.44 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |202408221                                   |45.64 %                                     |101826253                                   |45.92 %                                     |100581968                                   |45.36 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |108420377                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |48.90 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |16104325942                                 |35.95 %                                     |6507837898                                  |29.06 %                                     |9596488044                                  |42.85 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |6205226284                                  |13.85 %                                     |1167988389                                  |5.22 %                                      |5037237895                                  |22.49 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |6826728674                                  |15.24 %                                     |5336969227                                  |23.83 %                                     |1489759447                                  |6.65 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |15206177203                                 |33.95 %                                     |9160216485                                  |40.90 %                                     |6045960718                                  |27.00 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |447971699                                   |1.00 %                                      |222202902                                   |0.99 %                                      |225768797                                   |1.01 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |129666339                                  |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422375.01_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|100                                         |221734801                                  |
+--------------------------------------------+-------------------------------------------+
|100                                         |221734801                                  |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422375.01_isize.png

Sample K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs Lane 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422356.01
-------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |76282382                                    |100.00 %                                    |38141191                                    |100.00 %                                    |38141191                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |73773775                                    |96.71 %                                     |37007714                                    |97.03 %                                     |36766061                                    |96.39 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2508607                                     |3.29 %                                      |1133477                                     |2.97 %                                      |1375130                                     |3.61 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |37776894                                    |49.52 %                                     |18947734                                    |49.68 %                                     |18829160                                    |49.37 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |35996881                                    |47.19 %                                     |18059980                                    |47.35 %                                     |17936901                                    |47.03 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |29619643                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |77.66 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |2826969438                                  |36.69 %                                     |1086847681                                  |28.21 %                                     |1740121757                                  |45.17 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |989661913                                   |12.85 %                                     |49710743                                    |1.29 %                                      |939951170                                   |24.40 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1021589881                                  |13.26 %                                     |974812627                                   |25.30 %                                     |46777254                                    |1.21 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2786160097                                  |36.16 %                                     |1701028565                                  |44.16 %                                     |1085131532                                  |28.17 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |80139253                                    |1.04 %                                      |39860675                                    |1.03 %                                      |40278578                                    |1.05 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |35487639                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422356.01_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|100                                         |38141191                                   |
+--------------------------------------------+-------------------------------------------+
|100                                         |38141191                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 01_HepaRG.Bisulfite-Seq.DNA_methylation.EGAX00001422356.01_isize.png

