/EXTERNAL DEEP/mapping_coverage/K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs
BACK
SAMPLE K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1659753796 |
100% |
154738841313 |
100% |
| Mapped |
1637360147 |
98.65 % |
152528684033 |
98.57 % |
| Passed |
850694486 |
51.25 % |
75372659366 |
48.71 % |
| NotPassed |
786665661 |
47.40 % |
77156024667 |
49.86 % |
| |
|
|
|
|
| LowMAPQ |
512943528 |
30.90 % |
49995762785 |
32.31 % |
| MateUnmapped |
22393649 |
1.35 % |
2194234252 |
1.42 % |
| Duplicate |
223504635 |
13.47 % |
22261047893 |
14.39 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
105742 |
0.01 % |
10538063 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
50111756 |
3.02 % |
4888675926 |
3.16 % |
| Unmapped |
22393649 |
1.35 % |
2210157280 |
1.43 % |
Base Level Counts
| Bases |
# |
% |
| Total |
81085791975 |
100% |
| Passed |
70477635858 |
86.92 % |
| Trimmed |
3966069040 |
4.89 % |
| Clipped |
297851966 |
0.37 % |
| Overlapping |
5415280643 |
6.68 % |
| LowQuality |
928954468 |
1.15 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |