/EXTERNAL DEEP/methylation/K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs
BACK
SAMPLE K006038_K006039_K006040_K006041_K006042_K006043_K006044_7_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26449810 |
17058206 |
64.49 % |
| NonRefCpG |
320186 |
126418 |
39.48 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
14527119 |
28.19 % |
9405197 |
23.11 % |
222509 |
37.63 % |
99126 |
27.53 % |
| Intermediate (0.3-0.7) |
13162995 |
25.54 % |
9535881 |
23.43 % |
162202 |
27.43 % |
93947 |
26.09 % |
| Methylated (0.7-1) |
23839497 |
46.26 % |
21764521 |
53.47 % |
206561 |
34.94 % |
166966 |
46.37 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.650 |
|
0.730 |
|
0.480 |
|
0.650 |
|