/EXTERNAL DEEP/mapping_coverage/K006055_K006056_K006123_K006124_K006125_5_lane_gembs
BACK
SAMPLE K006055_K006056_K006123_K006124_K006125_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1213957277 |
100% |
111087260165 |
100% |
| Mapped |
1199616800 |
98.82 % |
109662914941 |
98.72 % |
| Passed |
840711617 |
69.25 % |
74084191614 |
66.69 % |
| NotPassed |
358905183 |
29.56 % |
35578723327 |
32.03 % |
| |
|
|
|
|
| LowMAPQ |
281523854 |
23.19 % |
27904203571 |
25.12 % |
| MateUnmapped |
14340477 |
1.18 % |
1421142983 |
1.28 % |
| Duplicate |
41392761 |
3.41 % |
4120855124 |
3.71 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
31444 |
0.00 % |
3133592 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
35957124 |
2.96 % |
3550531040 |
3.20 % |
| Unmapped |
14340477 |
1.18 % |
1424345224 |
1.28 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82434480534 |
100% |
| Passed |
69360087224 |
84.14 % |
| Trimmed |
3785568817 |
4.59 % |
| Clipped |
289402015 |
0.35 % |
| Overlapping |
8060886905 |
9.78 % |
| LowQuality |
938535573 |
1.14 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |