/EXTERNAL DEEP/K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs/41_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001422702.41

BACK

SAMPLE K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs LANE 41_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001422702.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	157607512	100.00 %	78803756	100.00 %	78803756	100.00 %
General Reads	151509462	96.13 %	76013299	96.46 %	75496163	95.80 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	33002	0.02 %	16574	0.02 %	16428	0.02 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	6065048	3.85 %	2773883	3.52 %	3291165	4.18 %
Bisulfite_reads C2T	78623046	49.89 %	39426446	50.03 %	39196600	49.74 %
Bisulfite_reads G2A	72919418	46.27 %	36603427	46.45 %	36315991	46.08 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	57219271
Average Unique	72.61 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	5906744706	37.11 %	2607430578	32.76 %	3299314128	41.45 %
Base Counts Overall C	1987890906	12.49 %	133428499	1.68 %	1854462407	23.30 %
Base Counts Overall G	2021788940	12.70 %	1899411042	23.86 %	122377898	1.54 %
Base Counts Overall T	5843245799	36.71 %	3239399005	40.70 %	2603846794	32.72 %
Base Counts Overall N	158688361	1.00 %	79510232	1.00 %	79178129	0.99 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9926796000875786
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	71312494

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	78803756
100	78803756

Insert Size Plot

Insert Size Histogram