/EXTERNAL DEEP/K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs/41_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001422716.41

BACK

SAMPLE K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs LANE 41_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001422716.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	190759880	100.00 %	95379940	100.00 %	95379940	100.00 %
General Reads	179748654	94.23 %	90209445	94.58 %	89539209	93.88 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	1042	0.00 %	539	0.00 %	503	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	11010184	5.77 %	5169956	5.42 %	5840228	6.12 %
Bisulfite_reads C2T	92255505	48.36 %	46288746	48.53 %	45966759	48.19 %
Bisulfite_reads G2A	87494191	45.87 %	43921238	46.05 %	43572953	45.68 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	59019045
Average Unique	61.88 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	6817416920	35.38 %	2683470832	27.86 %	4133946088	42.91 %
Base Counts Overall C	2767809113	14.37 %	438218168	4.55 %	2329590945	24.18 %
Base Counts Overall G	2903842418	15.07 %	2410810959	25.03 %	493031459	5.12 %
Base Counts Overall T	6582531158	34.17 %	4004477922	41.57 %	2578053236	26.76 %
Base Counts Overall N	195148271	1.01 %	96396059	1.00 %	98752212	1.03 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.060679552755964455
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	70844960

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	95379940
100	95379940

Insert Size Plot

Insert Size Histogram