/EXTERNAL DEEP/methylation/K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs
BACK
SAMPLE K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26542961 |
18084397 |
68.13 % |
| NonRefCpG |
331837 |
136449 |
41.12 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7345082 |
14.41 % |
4131851 |
10.05 % |
149241 |
24.54 % |
49148 |
13.00 % |
| Intermediate (0.3-0.7) |
12591987 |
24.70 % |
8793697 |
21.39 % |
167725 |
27.58 % |
93842 |
24.82 % |
| Methylated (0.7-1) |
31050774 |
60.90 % |
28192645 |
68.56 % |
291100 |
47.87 % |
235092 |
62.18 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.790 |
|
0.830 |
|
0.670 |
|
0.790 |
|