/EXTERNAL DEEP/K006067_K006068_K006069_K006070_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422789.43

BACK

SAMPLE K006067_K006068_K006069_K006070_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422789.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 365399756 100.00 % 182699878 100.00 % 182699878 100.00 %
General Reads 353365009 96.71 % 177640537 97.23 % 175724472 96.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4789206 1.31 % 2415127 1.32 % 2374079 1.30 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7245541 1.98 % 2644214 1.45 % 4601327 2.52 %
Bisulfite_reads C2T 184730318 50.56 % 92850003 50.82 % 91880315 50.29 %
Bisulfite_reads G2A 173423897 47.46 % 87205661 47.73 % 86218236 47.19 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 129143384
Average Unique 70.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13582617785 36.80 % 5181612651 28.08 % 8401005134 45.53 %
Base Counts Overall C 4761379396 12.90 % 448079350 2.43 % 4313300046 23.37 %
Base Counts Overall G 5000019030 13.55 % 4468924309 24.22 % 531094721 2.88 %
Base Counts Overall T 13115023313 35.54 % 8170931028 44.28 % 4944092285 26.79 %
Base Counts Overall N 446335832 1.21 % 183140340 0.99 % 263195492 1.43 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9828836586522413
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 150864703



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422789.43.mapq.png



Read Length

Read Length Reads
100 182699878
100 182699878



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422789.43.isize.png