/EXTERNAL DEEP/K006067_K006068_K006069_K006070_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422790.43

BACK

SAMPLE K006067_K006068_K006069_K006070_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422790.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 358242606 100.00 % 179121303 100.00 % 179121303 100.00 %
General Reads 352472810 98.39 % 177055847 98.85 % 175416963 97.93 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1699960 0.47 % 855887 0.48 % 844073 0.47 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4069836 1.14 % 1209569 0.68 % 2860267 1.60 %
Bisulfite_reads C2T 181780949 50.74 % 91303014 50.97 % 90477935 50.51 %
Bisulfite_reads G2A 172391821 48.12 % 86608720 48.35 % 85783101 47.89 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 148170753
Average Unique 82.72 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14397746978 39.79 % 5917390898 32.71 % 8480356080 46.88 %
Base Counts Overall C 3584439565 9.91 % 146600833 0.81 % 3437838732 19.00 %
Base Counts Overall G 3643204858 10.07 % 3504327902 19.37 % 138876956 0.77 %
Base Counts Overall T 14170955555 39.17 % 8343192676 46.12 % 5827762879 32.21 %
Base Counts Overall N 386156250 1.07 % 179739294 0.99 % 206416956 1.14 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9955055774035417
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 169017072



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422790.43.mapq.png



Read Length

Read Length Reads
100 179121303
100 179121303



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422790.43.isize.png