/EXTERNAL DEEP/K006067_K006068_K006069_K006070_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422793.43

BACK

SAMPLE K006067_K006068_K006069_K006070_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422793.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 350766046 100.00 % 175383023 100.00 % 175383023 100.00 %
General Reads 345004592 98.36 % 173313307 98.82 % 171691285 97.90 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1666055 0.47 % 838380 0.48 % 827675 0.47 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4095399 1.17 % 1231336 0.70 % 2864063 1.63 %
Bisulfite_reads C2T 177932884 50.73 % 89374781 50.96 % 88558103 50.49 %
Bisulfite_reads G2A 168737763 48.11 % 84776906 48.34 % 83960857 47.87 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 144977123
Average Unique 82.66 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14084920860 39.76 % 5789900205 32.69 % 8295020655 46.83 %
Base Counts Overall C 3514786098 9.92 % 144189113 0.81 % 3370596985 19.03 %
Base Counts Overall G 3572178072 10.08 % 3435262696 19.39 % 136915376 0.77 %
Base Counts Overall T 13873687206 39.16 % 8167675799 46.11 % 5706011407 32.21 %
Base Counts Overall N 381798410 1.08 % 176657510 1.00 % 205140900 1.16 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9954797054801168
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 165398036



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422793.43.mapq.png



Read Length

Read Length Reads
100 175383023
100 175383023



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422793.43.isize.png