/EXTERNAL DEEP/K006067_K006068_K006069_K006070_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422794.43

BACK

SAMPLE K006067_K006068_K006069_K006070_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422794.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 361182530 100.00 % 180591265 100.00 % 180591265 100.00 %
General Reads 355698322 98.48 % 178567627 98.88 % 177130695 98.08 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1735673 0.48 % 872579 0.48 % 863094 0.48 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3748535 1.04 % 1151059 0.64 % 2597476 1.44 %
Bisulfite_reads C2T 183547014 50.82 % 92134607 51.02 % 91412407 50.62 %
Bisulfite_reads G2A 173886981 48.14 % 87305599 48.34 % 86581382 47.94 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 149956012
Average Unique 83.04 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14464721502 39.65 % 5953357949 32.64 % 8511363553 46.66 %
Base Counts Overall C 3643954092 9.99 % 149663394 0.82 % 3494290698 19.16 %
Base Counts Overall G 3697641172 10.14 % 3556850204 19.50 % 140790968 0.77 %
Base Counts Overall T 14311370999 39.23 % 8398876159 46.05 % 5912494840 32.42 %
Base Counts Overall N 361747765 0.99 % 180970059 0.99 % 180777706 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9953627990381432
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 171088916



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422794.43.mapq.png



Read Length

Read Length Reads
100 180591265
100 180591265



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422794.43.isize.png