/EXTERNAL DEEP/mapping_coverage/K006067_K006068_K006069_K006070_4_lane_gembs
BACK
SAMPLE K006067_K006068_K006069_K006070_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1360117132 |
100% |
127779476461 |
100% |
| Mapped |
1347834494 |
99.10 % |
126551212661 |
99.04 % |
| Passed |
1048244994 |
77.07 % |
96592262661 |
75.59 % |
| NotPassed |
299589500 |
22.03 % |
29958950000 |
23.45 % |
| |
|
|
|
|
| LowMAPQ |
209482290 |
15.40 % |
20948229000 |
16.39 % |
| MateUnmapped |
12282638 |
0.90 % |
1228263800 |
0.96 % |
| Duplicate |
46589535 |
3.43 % |
4658953500 |
3.65 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
19264 |
0.00 % |
1926400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
43498411 |
3.20 % |
4349841100 |
3.40 % |
| Unmapped |
12282638 |
0.90 % |
1228263800 |
0.96 % |
Base Level Counts
| Bases |
# |
% |
| Total |
104801076800 |
100% |
| Passed |
90060737106 |
85.93 % |
| Trimmed |
4808350820 |
4.59 % |
| Clipped |
203797530 |
0.19 % |
| Overlapping |
8005016609 |
7.64 % |
| LowQuality |
1723174735 |
1.64 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |