/EXTERNAL DEEP/methylation/K006067_K006068_K006069_K006070_4_lane_gembs
BACK
SAMPLE K006067_K006068_K006069_K006070_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26732042 |
21906946 |
81.95 % |
| NonRefCpG |
292848 |
190560 |
65.07 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5527568 |
10.57 % |
2943768 |
6.40 % |
63710 |
11.78 % |
18856 |
4.58 % |
| Intermediate (0.3-0.7) |
7608381 |
14.55 % |
5927468 |
12.88 % |
94822 |
17.54 % |
54617 |
13.28 % |
| Methylated (0.7-1) |
39159142 |
74.88 % |
37132933 |
80.72 % |
382150 |
70.68 % |
337884 |
82.14 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.880 |
|
0.850 |
|
0.880 |
|