/EXTERNAL DEEP/K006071_K006072_K006073_K006074_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422736.43

BACK

SAMPLE K006071_K006072_K006073_K006074_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422736.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 352563678 100.00 % 176281839 100.00 % 176281839 100.00 %
General Reads 347499318 98.56 % 174443433 98.96 % 173055885 98.17 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1331037 0.38 % 668528 0.38 % 662509 0.38 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3733323 1.06 % 1169878 0.66 % 2563445 1.45 %
Bisulfite_reads C2T 179116017 50.80 % 89904219 51.00 % 89211798 50.61 %
Bisulfite_reads G2A 169714338 48.14 % 85207742 48.34 % 84506596 47.94 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 146359203
Average Unique 83.03 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14149311233 39.74 % 5867271097 32.95 % 8282040136 46.52 %
Base Counts Overall C 3537389132 9.93 % 147789671 0.83 % 3389599461 19.04 %
Base Counts Overall G 3586298440 10.07 % 3446546983 19.36 % 139751457 0.78 %
Base Counts Overall T 13956186789 39.19 % 8166221456 45.87 % 5789965333 32.52 %
Base Counts Overall N 379745884 1.07 % 176636532 0.99 % 203109352 1.14 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9935561665988293
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 167081486



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422736.43.mapq.png



Read Length

Read Length Reads
100 176281839
100 176281839



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422736.43.isize.png