/EXTERNAL DEEP/mapping_coverage/K006071_K006072_K006073_K006074_4_lane_gembs
BACK
SAMPLE K006071_K006072_K006073_K006074_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1332820501 |
100% |
125342935239 |
100% |
| Mapped |
1321561670 |
99.16 % |
124217052139 |
99.10 % |
| Passed |
1049121133 |
78.71 % |
96972998439 |
77.37 % |
| NotPassed |
272440537 |
20.44 % |
27244053700 |
21.74 % |
| |
|
|
|
|
| LowMAPQ |
211156356 |
15.84 % |
21115635600 |
16.85 % |
| MateUnmapped |
11258831 |
0.84 % |
1125883100 |
0.90 % |
| Duplicate |
22566780 |
1.69 % |
2256678000 |
1.80 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
21894 |
0.00 % |
2189400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
38695507 |
2.90 % |
3869550700 |
3.09 % |
| Unmapped |
11258831 |
0.84 % |
1125883100 |
0.90 % |
Base Level Counts
| Bases |
# |
% |
| Total |
104887188300 |
100% |
| Passed |
90472597856 |
86.26 % |
| Trimmed |
4834108237 |
4.61 % |
| Clipped |
204379607 |
0.19 % |
| Overlapping |
7709810254 |
7.35 % |
| LowQuality |
1666292346 |
1.59 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |