/EXTERNAL DEEP/methylation/K006071_K006072_K006073_K006074_4_lane_gembs
BACK
SAMPLE K006071_K006072_K006073_K006074_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26711867 |
21520364 |
80.56 % |
| NonRefCpG |
292509 |
188041 |
64.29 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5427681 |
10.40 % |
2598620 |
5.75 % |
63333 |
11.73 % |
18186 |
4.46 % |
| Intermediate (0.3-0.7) |
7961096 |
15.26 % |
6040527 |
13.36 % |
97465 |
18.06 % |
56060 |
13.76 % |
| Methylated (0.7-1) |
38786910 |
74.34 % |
36582487 |
80.90 % |
378993 |
70.21 % |
333301 |
81.78 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.880 |
|
0.840 |
|
0.880 |
|