/EXTERNAL DEEP/K006078_K006079_K006080_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422910.43

BACK

SAMPLE K006078_K006079_K006080_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422910.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 370520048 100.00 % 185260024 100.00 % 185260024 100.00 %
General Reads 365864034 98.74 % 183345253 98.97 % 182518781 98.52 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1586364 0.43 % 795167 0.43 % 791197 0.43 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3069650 0.83 % 1119604 0.60 % 1950046 1.05 %
Bisulfite_reads C2T 188554661 50.89 % 94482025 51.00 % 94072636 50.78 %
Bisulfite_reads G2A 178895737 48.28 % 89658395 48.40 % 89237342 48.17 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 157232035
Average Unique 84.87 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14746342005 39.40 % 6169648191 32.97 % 8576693814 45.84 %
Base Counts Overall C 3769089453 10.07 % 149960339 0.80 % 3619129114 19.34 %
Base Counts Overall G 3776404975 10.09 % 3636937825 19.44 % 139467150 0.75 %
Base Counts Overall T 14751495067 39.42 % 8569277180 45.80 % 6182217887 33.04 %
Base Counts Overall N 379193348 1.01 % 185438889 0.99 % 193754459 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9956949898988986
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 178578879



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422910.43.mapq.png



Read Length

Read Length Reads
100 185260024
100 185260024



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422910.43.isize.png