/EXTERNAL DEEP/K006078_K006079_K006080_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422911.43

BACK

SAMPLE K006078_K006079_K006080_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422911.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 399066758 100.00 % 199533379 100.00 % 199533379 100.00 %
General Reads 392660562 98.39 % 197506122 98.98 % 195154440 97.81 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1696124 0.43 % 853531 0.43 % 842593 0.42 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4710072 1.18 % 1173726 0.59 % 3536346 1.77 %
Bisulfite_reads C2T 202302864 50.69 % 101741072 50.99 % 100561792 50.40 %
Bisulfite_reads G2A 192053822 48.13 % 96618581 48.42 % 95435241 47.83 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 168144252
Average Unique 84.27 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15840715214 39.30 % 6640659771 32.95 % 9200055443 45.65 %
Base Counts Overall C 3988560874 9.90 % 156230977 0.78 % 3832329897 19.02 %
Base Counts Overall G 4083048215 10.13 % 3936062938 19.53 % 146985277 0.73 %
Base Counts Overall T 15846151630 39.31 % 9220290546 45.75 % 6625861084 32.88 %
Base Counts Overall N 547266625 1.36 % 199627047 0.99 % 347639578 1.73 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9957503893170371
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 190899473



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422911.43.mapq.png



Read Length

Read Length Reads
100 199533379
100 199533379



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422911.43.isize.png