/EXTERNAL DEEP/K006078_K006079_K006080_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422912.43

BACK

SAMPLE K006078_K006079_K006080_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422912.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 412066944 100.00 % 206033472 100.00 % 206033472 100.00 %
General Reads 397088325 96.37 % 199945209 97.05 % 197143116 95.68 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5431951 1.32 % 2756064 1.34 % 2675887 1.30 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9546668 2.32 % 3332199 1.62 % 6214469 3.02 %
Bisulfite_reads C2T 207463042 50.35 % 104443181 50.69 % 103019861 50.00 %
Bisulfite_reads G2A 195057234 47.34 % 98258092 47.69 % 96799142 46.98 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 140046210
Average Unique 67.97 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15055162507 36.17 % 5917162622 28.44 % 9137999885 43.91 %
Base Counts Overall C 5562957611 13.37 % 582929417 2.80 % 4980028194 23.93 %
Base Counts Overall G 5834764122 14.02 % 5133742503 24.67 % 701021619 3.37 %
Base Counts Overall T 14598746746 35.08 % 8969368641 43.10 % 5629378105 27.05 %
Base Counts Overall N 567130358 1.36 % 206177489 0.99 % 360952869 1.73 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9808821101851939
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 163160955



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422912.43.mapq.png



Read Length

Read Length Reads
100 206033472
100 206033472



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422912.43.isize.png