/EXTERNAL DEEP/K006078_K006079_K006080_3_lane_gembs

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SAMPLE K006078_K006079_K006080_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1181653750 100.00 % 590826875 100.00 % 590826875 100.00 %
General Reads 1155612921 97.80 % 580796584 98.30 % 574816337 97.29 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8714439 0.74 % 4404762 0.75 % 4309677 0.73 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17326390 1.47 % 5625529 0.95 % 11700861 1.98 %
Bisulfite_reads C2T 598320567 50.63 % 300666278 50.89 % 297654289 50.38 %
Bisulfite_reads G2A 566006793 47.90 % 284535068 48.16 % 281471725 47.64 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 465422497
Average Unique 78.77 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 45642219726 38.24 % 18727470584 31.38 % 26914749142 45.10 %
Base Counts Overall C 13320607938 11.16 % 889120733 1.49 % 12431487205 20.83 %
Base Counts Overall G 13694217312 11.47 % 12706743266 21.29 % 987474046 1.65 %
Base Counts Overall T 45196393443 37.87 % 26758936367 44.84 % 18437457076 30.90 %
Base Counts Overall N 1493590331 1.25 % 591243425 0.99 % 902346906 1.51 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9864743151605855
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 532639307



Mapping Quality

Mapping Quality Histogram
K006078_K006079_K006080_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006078_K006079_K006080_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422911.43
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422912.43
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422910.43