/EXTERNAL DEEP/mapping_coverage/K006078_K006079_K006080_3_lane_gembs
BACK
SAMPLE K006078_K006079_K006080_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1103414412 |
100% |
104350646606 |
100% |
| Mapped |
1092492467 |
99.01 % |
103258452106 |
98.95 % |
| Passed |
823697541 |
74.65 % |
76378959506 |
73.19 % |
| NotPassed |
268794926 |
24.36 % |
26879492600 |
25.76 % |
| |
|
|
|
|
| LowMAPQ |
190087182 |
17.23 % |
19008718200 |
18.22 % |
| MateUnmapped |
10921945 |
0.99 % |
1092194500 |
1.05 % |
| Duplicate |
52483990 |
4.76 % |
5248399000 |
5.03 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
26538 |
0.00 % |
2653800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
26197216 |
2.37 % |
2619721600 |
2.51 % |
| Unmapped |
10921945 |
0.99 % |
1092194500 |
1.05 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82345349800 |
100% |
| Passed |
71172292054 |
86.43 % |
| Trimmed |
3784645785 |
4.60 % |
| Clipped |
175831859 |
0.21 % |
| Overlapping |
5790558435 |
7.03 % |
| LowQuality |
1422021667 |
1.73 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |