/EXTERNAL DEEP/methylation/K006078_K006079_K006080_3_lane_gembs
BACK
SAMPLE K006078_K006079_K006080_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26660911 |
20906733 |
78.42 % |
| NonRefCpG |
301214 |
178328 |
59.20 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5428538 |
10.49 % |
2611659 |
5.90 % |
79354 |
14.31 % |
21933 |
5.48 % |
| Intermediate (0.3-0.7) |
8107144 |
15.66 % |
6044409 |
13.65 % |
104781 |
18.90 % |
58616 |
14.63 % |
| Methylated (0.7-1) |
38226464 |
73.85 % |
35636165 |
80.46 % |
370405 |
66.79 % |
320014 |
79.89 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.880 |
|
0.830 |
|
0.880 |
|