/EXTERNAL DEEP/K006081_K006082_K006083_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423050.43

BACK

SAMPLE K006081_K006082_K006083_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423050.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 408487712 100.00 % 204243856 100.00 % 204243856 100.00 %
General Reads 393057920 96.22 % 197716294 96.80 % 195341626 95.64 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6522117 1.60 % 3299406 1.62 % 3222711 1.58 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8907675 2.18 % 3228156 1.58 % 5679519 2.78 %
Bisulfite_reads C2T 205922000 50.41 % 103567303 50.71 % 102354697 50.11 %
Bisulfite_reads G2A 193658037 47.41 % 97448397 47.71 % 96209640 47.11 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 141110968
Average Unique 69.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15100084361 36.60 % 5872376567 28.47 % 9227707794 44.73 %
Base Counts Overall C 5328244261 12.91 % 529855239 2.57 % 4798389022 23.26 %
Base Counts Overall G 5643782728 13.68 % 4992074398 24.20 % 651708330 3.16 %
Base Counts Overall T 14636639162 35.48 % 9029959801 43.77 % 5606679361 27.18 %
Base Counts Overall N 548508400 1.33 % 204363451 0.99 % 344144949 1.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9781415043091
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 164151980



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423050.43.mapq.png



Read Length

Read Length Reads
100 204243856
100 204243856



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423050.43.isize.png