/EXTERNAL DEEP/K006081_K006082_K006083_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423051.43

BACK

SAMPLE K006081_K006082_K006083_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423051.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 387877254 100.00 % 193938627 100.00 % 193938627 100.00 %
General Reads 381763376 98.42 % 192011629 99.01 % 189751747 97.84 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1472152 0.38 % 740593 0.38 % 731559 0.38 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4641726 1.20 % 1186405 0.61 % 3455321 1.78 %
Bisulfite_reads C2T 196777496 50.73 % 98954281 51.02 % 97823215 50.44 %
Bisulfite_reads G2A 186458032 48.07 % 93797941 48.36 % 92660091 47.78 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 162836944
Average Unique 83.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15348797088 39.18 % 6457094493 32.96 % 8891702595 45.39 %
Base Counts Overall C 3915348920 9.99 % 168511955 0.86 % 3746836965 19.13 %
Base Counts Overall G 4005643173 10.22 % 3843099856 19.62 % 162543317 0.83 %
Base Counts Overall T 15359451392 39.21 % 8925024911 45.56 % 6434426481 32.85 %
Base Counts Overall N 546362081 1.39 % 194070112 0.99 % 352291969 1.80 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9915327235468394
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 185315795



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423051.43.mapq.png



Read Length

Read Length Reads
100 193938627
100 193938627



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423051.43.isize.png