/EXTERNAL DEEP/K006081_K006082_K006083_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423052.43

BACK

SAMPLE K006081_K006082_K006083_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423052.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 353009754 100.00 % 176504877 100.00 % 176504877 100.00 %
General Reads 348623188 98.76 % 174682735 98.97 % 173940453 98.55 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1347944 0.38 % 675574 0.38 % 672370 0.38 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3038622 0.86 % 1146568 0.65 % 1892054 1.07 %
Bisulfite_reads C2T 179732310 50.91 % 90051175 51.02 % 89681135 50.81 %
Bisulfite_reads G2A 170238822 48.22 % 85307134 48.33 % 84931688 48.12 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 149007549
Average Unique 84.42 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14029412944 39.35 % 5887663401 33.03 % 8141749543 45.67 %
Base Counts Overall C 3620148995 10.15 % 159537295 0.89 % 3460611700 19.41 %
Base Counts Overall G 3620074989 10.15 % 3468914948 19.46 % 151160041 0.85 %
Base Counts Overall T 14023244938 39.33 % 8134224633 45.63 % 5889020305 33.03 %
Base Counts Overall N 361103288 1.01 % 176652300 0.99 % 184450988 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.991393677097518
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 169702140



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423052.43.mapq.png



Read Length

Read Length Reads
100 176504877
100 176504877



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001423052.43.isize.png