/EXTERNAL DEEP/mapping_coverage/K006081_K006082_K006083_3_lane_gembs
BACK
SAMPLE K006081_K006082_K006083_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1097565071 |
100% |
102403929226 |
100% |
| Mapped |
1087037382 |
99.04 % |
101351160326 |
98.97 % |
| Passed |
850940773 |
77.53 % |
77741499426 |
75.92 % |
| NotPassed |
236096609 |
21.51 % |
23609660900 |
23.06 % |
| |
|
|
|
|
| LowMAPQ |
184709552 |
16.83 % |
18470955200 |
18.04 % |
| MateUnmapped |
10527689 |
0.96 % |
1052768900 |
1.03 % |
| Duplicate |
26001422 |
2.37 % |
2600142200 |
2.54 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
22048 |
0.00 % |
2204800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
25363587 |
2.31 % |
2536358700 |
2.48 % |
| Unmapped |
10527689 |
0.96 % |
1052768900 |
1.03 % |
Base Level Counts
| Bases |
# |
% |
| Total |
85072987100 |
100% |
| Passed |
72426796462 |
85.13 % |
| Trimmed |
3852309922 |
4.53 % |
| Clipped |
209805149 |
0.25 % |
| Overlapping |
7121682525 |
8.37 % |
| LowQuality |
1462393042 |
1.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |