/EXTERNAL DEEP/methylation/K006081_K006082_K006083_3_lane_gembs
BACK
SAMPLE K006081_K006082_K006083_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26629707 |
21068412 |
79.12 % |
| NonRefCpG |
297977 |
178995 |
60.07 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5404078 |
10.42 % |
2715568 |
6.08 % |
73574 |
13.43 % |
20362 |
5.10 % |
| Intermediate (0.3-0.7) |
7988052 |
15.40 % |
6029244 |
13.49 % |
102464 |
18.70 % |
57457 |
14.39 % |
| Methylated (0.7-1) |
38472510 |
74.18 % |
35940348 |
80.43 % |
371794 |
67.87 % |
321387 |
80.51 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.880 |
|
0.830 |
|
0.880 |
|