/EXTERNAL DEEP/K006084_K006085_K006086_K006126_4_lane_gembs/51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423082.51

BACK

SAMPLE K006084_K006085_K006086_K006126_4_lane_gembs LANE 51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423082.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 298769994 100.00 % 149384997 100.00 % 149384997 100.00 %
General Reads 294619817 98.61 % 147844128 98.97 % 146775689 98.25 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3 0.00 % 1 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4150174 1.39 % 1540868 1.03 % 2609306 1.75 %
Bisulfite_reads C2T 150267452 50.30 % 75397938 50.47 % 74869514 50.12 %
Bisulfite_reads G2A 144352368 48.32 % 72446191 48.50 % 71906177 48.13 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 124891089
Average Unique 83.60 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11794662905 39.09 % 4651714888 30.83 % 7142948017 47.34 %
Base Counts Overall C 3122739666 10.35 % 122677086 0.81 % 3000062580 19.88 %
Base Counts Overall G 3125077103 10.36 % 3007809195 19.94 % 117267908 0.78 %
Base Counts Overall T 11767623037 39.00 % 7156027221 47.43 % 4611595816 30.56 %
Base Counts Overall N 365666683 1.21 % 149656307 0.99 % 216010376 1.43 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 142398063



Mapping Quality

Mapping Quality Histogram
51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423082.51.mapq.png



Read Length

Read Length Reads
100 149384997
100 149384997



Insert Size Plot

Insert Size Histogram
51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423082.51.isize.png