{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 83227600, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 81112697, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.46, 
            "paired": 83227600, 
            "paired_qc_failed": 0, 
            "read1": 41613800, 
            "read1_qc_failed": 0, 
            "read2": 41613800, 
            "read2_qc_failed": 0, 
            "paired_properly": 80032182, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.16, 
            "with_itself": 80713997, 
            "with_itself_qc_failed": 0, 
            "singletons": 398700, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.48, 
            "diff_chroms": 111859, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 294654588, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 290510210, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.59, 
            "paired": 294654588, 
            "paired_qc_failed": 0, 
            "read1": 147327294, 
            "read1_qc_failed": 0, 
            "read2": 147327294, 
            "read2_qc_failed": 0, 
            "paired_properly": 281900859, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.67, 
            "with_itself": 288529717, 
            "with_itself_qc_failed": 0, 
            "singletons": 1980493, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.67, 
            "diff_chroms": 3476801, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 33971687, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 16210851, 
            "paired_opt_dupes": 7408, 
            "dupes_pct": 0.477187
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 117328478, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 14788109, 
            "paired_opt_dupes": 29230, 
            "dupes_pct": 0.12604
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 33970518, 
            "distinct_read_pairs": 17760220, 
            "one_read_pair": 9345550, 
            "two_read_pair": 4310096, 
            "NRF": 0.522813, 
            "PBC1": 0.526207, 
            "PBC2": 2.168293
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 117267661, 
            "distinct_read_pairs": 102488519, 
            "one_read_pair": 89380125, 
            "two_read_pair": 11628471, 
            "NRF": 0.873971, 
            "PBC1": 0.872099, 
            "PBC2": 7.686318
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 35521672, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 35521672, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 35521672, 
            "paired_qc_failed": 0, 
            "read1": 17760836, 
            "read1_qc_failed": 0, 
            "read2": 17760836, 
            "read2_qc_failed": 0, 
            "paired_properly": 35521672, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 35521672, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 205080738, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 205080738, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 205080738, 
            "paired_qc_failed": 0, 
            "read1": 102540369, 
            "read1_qc_failed": 0, 
            "read2": 102540369, 
            "read2_qc_failed": 0, 
            "paired_properly": 205080738, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 205080738, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 39687, 
        "Np": 0, 
        "N_opt": 39687, 
        "N_consv": 39687, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 160, 
            "corr_est_frag_len": 0.1464946573734, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1486308, 
            "argmin_corr": 1500, 
            "min_corr": 0.1197916, 
            "NSC": 1.222913, 
            "RSC": 0.925929
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.256782348417
        }, 
        "rep1-pr1": {
            "FRiP": 0.274712644325
        }, 
        "rep1-pr2": {
            "FRiP": 0.274422783051
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.224337986804
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.225523983071, 
            "auc": 0.491651484151, 
            "ch_div": 0.161640576581, 
            "elbow_pt": 2.43388534757e-122, 
            "jsd": 0.648487574722, 
            "syn_auc": 0.499586002808, 
            "syn_elbow_pt": 0.286123812519, 
            "syn_jsd": 0.363718799868
        }
    ]
}