/EXTERNAL DEEP/K006087_K006088_K006089_3_lane_gembs/51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423128.51

BACK

SAMPLE K006087_K006088_K006089_3_lane_gembs LANE 51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423128.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 361543922 100.00 % 180771961 100.00 % 180771961 100.00 %
General Reads 357754779 98.95 % 179553138 99.33 % 178201641 98.58 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 36 0.00 % 20 0.00 % 16 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3789107 1.05 % 1218803 0.67 % 2570304 1.42 %
Bisulfite_reads C2T 186924861 51.70 % 93788121 51.88 % 93136740 51.52 %
Bisulfite_reads G2A 170829954 47.25 % 85765037 47.44 % 85064917 47.06 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 133993381
Average Unique 74.12 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13571723094 37.17 % 5846041845 32.02 % 7725681249 42.31 %
Base Counts Overall C 4561406628 12.49 % 210311819 1.15 % 4351094809 23.83 %
Base Counts Overall G 4588502415 12.57 % 4396734925 24.08 % 191767490 1.05 %
Base Counts Overall T 13424939447 36.76 % 7621655763 41.74 % 5803283684 31.78 %
Base Counts Overall N 369364538 1.01 % 183223709 1.00 % 186140829 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 167862991



Mapping Quality

Mapping Quality Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423128.51.mapq.png



Read Length

Read Length Reads
100 180771961
100 180771961



Insert Size Plot

Insert Size Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423128.51.isize.png