/EXTERNAL DEEP/K006087_K006088_K006089_3_lane_gembs/51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423130.51

BACK

SAMPLE K006087_K006088_K006089_3_lane_gembs LANE 51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423130.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 358109172 100.00 % 179054586 100.00 % 179054586 100.00 %
General Reads 344709325 96.26 % 173387695 96.84 % 171321630 95.68 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2869645 0.80 % 1451602 0.81 % 1418043 0.79 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 10530202 2.94 % 4215289 2.35 % 6314913 3.53 %
Bisulfite_reads C2T 178300674 49.79 % 89662828 50.08 % 88637846 49.50 %
Bisulfite_reads G2A 169278296 47.27 % 85176469 47.57 % 84101827 46.97 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 108637809
Average Unique 60.67 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13134250684 36.31 % 5042248823 27.88 % 8092001861 44.75 %
Base Counts Overall C 4863454310 13.45 % 624891968 3.46 % 4238562342 23.44 %
Base Counts Overall G 5137213193 14.20 % 4376925486 24.20 % 760287707 4.20 %
Base Counts Overall T 12672447142 35.04 % 7860780007 43.47 % 4811667135 26.61 %
Base Counts Overall N 361661043 1.00 % 179666902 0.99 % 181994141 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9764820910240398
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 128483926



Mapping Quality

Mapping Quality Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423130.51.mapq.png



Read Length

Read Length Reads
100 179054586
100 179054586



Insert Size Plot

Insert Size Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423130.51.isize.png