/EXTERNAL DEEP/mapping_coverage/K006090_K006091_K006092_3_lane_gembs
BACK
SAMPLE K006090_K006091_K006092_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1016841644 |
100% |
95589538204 |
100% |
| Mapped |
1006091349 |
98.94 % |
94514508704 |
98.88 % |
| Passed |
680712188 |
66.94 % |
61976592604 |
64.84 % |
| NotPassed |
325379161 |
32.00 % |
32537916100 |
34.04 % |
| |
|
|
|
|
| LowMAPQ |
263040838 |
25.87 % |
26304083800 |
27.52 % |
| MateUnmapped |
10750295 |
1.06 % |
1075029500 |
1.12 % |
| Duplicate |
18885252 |
1.86 % |
1888525200 |
1.98 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
162592 |
0.02 % |
16259200 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
43290479 |
4.26 % |
4329047900 |
4.53 % |
| Unmapped |
10750295 |
1.06 % |
1075029500 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
68054051000 |
100% |
| Passed |
58028876968 |
85.27 % |
| Trimmed |
3097364852 |
4.55 % |
| Clipped |
213486714 |
0.31 % |
| Overlapping |
5863971682 |
8.62 % |
| LowQuality |
850350784 |
1.25 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |