/EXTERNAL DEEP/methylation/K006090_K006091_K006092_3_lane_gembs
BACK
SAMPLE K006090_K006091_K006092_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26362986 |
17232529 |
65.37 % |
| NonRefCpG |
250222 |
76441 |
30.55 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7432232 |
14.60 % |
4037715 |
10.10 % |
130598 |
28.97 % |
37105 |
15.42 % |
| Intermediate (0.3-0.7) |
13797769 |
27.10 % |
9570778 |
23.94 % |
135706 |
30.10 % |
68209 |
28.34 % |
| Methylated (0.7-1) |
29677291 |
58.30 % |
26377472 |
65.97 % |
184525 |
40.93 % |
135377 |
56.25 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.760 |
|
0.810 |
|
0.600 |
|
0.750 |
|